how to reference the plugins used - QIIME 2 Forum
Jan 8, 2022 · I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic …
q2-SCNIC: A tool for making correlation networks, finding …
Sep 20, 2018 · q2-SCNIC: Community Tutorial SCNIC (Sparse Cooccurnce Network Investigation for Compositional data) is a tool for building correlation networks from feature tables, finding …
Importing bins/mags into Qiime2 - Technical Support - QIIME 2 …
Mar 31, 2025 · Dear devs, dear users I am processing metagenome dataset. I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I …
taxonomy mitochondria vs D_4__Mitochondria - General …
Apr 21, 2025 · Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object …
q2-SCNIC installation - Library Support - QIIME 2 Forum
Aug 17, 2021 · I'm new to using QIIME2. I have installation problem with q2-SCNIC now. I fallowed this installation guide GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running …
PERMANOVA results significant, but differential abundance results ...
Oct 19, 2025 · Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant …
qiime2R installation issue - Library Support - QIIME 2 Forum
Feb 13, 2020 · I have a problem with the installation of package. Namely, when I try to install it using "devtools::install_github ("jbisanz/qiime2R" I get the following error:
q2 fondue get-ids-error: Object of type set is not JSON serializable ...
Aug 11, 2025 · This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum
Mar 23, 2023 · UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, …
Pielou’s evenness, Faith's PD and Shannon’s ... - QIIME 2 Forum
May 30, 2020 · Dear all! Could you recommend me an article to cite that it is "legal" or appropriate to estimate alpha diversity metrics based on ASV tables instead of species or OTUs. In my …